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IPPS
2006
IEEE
13 years 10 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
COCOA
2008
Springer
13 years 6 months ago
Algorithms and Experimental Study for the Traveling Salesman Problem of Second Order
We introduce a new combinatorial optimization problem, which is a generalization of the Traveling Salesman Problem (TSP) and which we call Traveling Salesman Problem of Second Orde...
Gerold Jäger, Paul Molitor
BIOCOMP
2006
13 years 5 months ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John
IISWC
2006
IEEE
13 years 10 months ago
An Architectural Characterization Study of Data Mining and Bioinformatics Workloads
— Data mining is the process of automatically finding implicit, previously unknown, and potentially useful information from large volumes of data. Recent advances in data extrac...
Berkin Özisikyilmaz, Ramanathan Narayanan, Jo...
AINA
2005
IEEE
13 years 10 months ago
Implementation and Evaluation of a Java Based Computational Grid for Bioinformatics Applications
In the present study, THUBioGrid, an experimental distributed computing application for bioinformatics (BioGrid) is proposed. THUBioGrid incorporates directory services (data and ...
Chao-Tung Yang, Yi-Chun Hsiung, Heng-Chuan Kan