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» Annotation of metagenome short reads using proxygenes
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ECCB
2008
IEEE
13 years 11 months ago
Annotation of metagenome short reads using proxygenes
Daniel Dalevi, Natalia Ivanova, Konstantinos Mavro...
BMCBI
2010
127views more  BMCBI 2010»
13 years 4 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
BMCBI
2010
120views more  BMCBI 2010»
13 years 4 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson