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» Application of Graph-based Data Mining to Metabolic Pathways
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ICDM
2006
IEEE
152views Data Mining» more  ICDM 2006»
13 years 10 months ago
Application of Graph-based Data Mining to Metabolic Pathways
We present a method for finding biologically meaningful patterns on metabolic pathways using the SUBDUE graph-based relational learning system. A huge amount of biological data t...
Chang Hun You, Lawrence B. Holder, Diane J. Cook
KDD
2002
ACM
107views Data Mining» more  KDD 2002»
14 years 5 months ago
Clustering and Classifying Enzymes in Metabolic Pathways: Some Preliminary Results
Sen Zhang, Li Liao, Jean-Francois Tomb, Jason Tson...
IV
2008
IEEE
296views Visualization» more  IV 2008»
13 years 11 months ago
Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks
This article is addressing a recurrent problem in biology: mining newly built large scale networks. Our approach consists in comparing these new networks to well known ones. The v...
Romain Bourqui, Fabien Jourdan
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
13 years 10 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
DILS
2009
Springer
13 years 8 months ago
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism
Abstract. To advance the comprehension of complex biological processes occurring in crop plants (e.g. for improvement of growth or yield) it is of high interest to reconstruct and ...
Stephan Weise, Christian Colmsee, Eva Grafahrend-B...