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    » AuberGene - a sensitive genome alignment tool
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    ISMB
    1996
    124views Computational Biology» more  ISMB 1996»
    Compact Encoding Strategies for DNA Sequence Similarity Search
    13 years 6 months ago
    Compact Encoding Strategies for DNA Sequence Similarity Search
    Download  www.stateslab.org
    Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
    David J. States, Pankaj Agarwal
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    BMCBI
    2005
    152views more  BMCBI 2005»
    Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
    13 years 5 months ago
    Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
    Download  www.biomedcentral.com
    Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
    Markus Wistrand, Erik L. L. Sonnhammer
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    BMCBI
    2006
    160views more  BMCBI 2006»
    Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
    13 years 5 months ago
    Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
    Download  www.biomedcentral.com
    Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
    Mario Stanke, Oliver Schöffmann, Burkhard Mor...
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