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» Automating Gene Expression Annotation for Mouse Embryo
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BMCBI
2008
146views more  BMCBI 2008»
13 years 5 months ago
EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries
Background: Several biological techniques result in the acquisition of functional sets of cDNAs that must be sequenced and analyzed. The emergence of redundant databases such as U...
Robin P. Smith, William J. Buchser, Marcus B. Lemm...
NAR
2011
188views Computer Vision» more  NAR 2011»
12 years 8 months ago
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
Various databases have harnessed the wealth of publicly available microarray data to address biological questions ranging from across-tissue differential expression to homologous ...
Matthew N. McCall, Karan Uppal, Harris A. Jaffee, ...
BMCBI
2007
129views more  BMCBI 2007»
13 years 5 months ago
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
Background: Incorrectly annotated sequence data are becoming more commonplace as databases increasingly rely on automated techniques for annotation. Hence, there is an urgent need...
Carson M. Andorf, Drena Dobbs, Vasant Honavar
BIRD
2007
Springer
154views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Mining Spatial Gene Expression Data for Association Rules
Abstract. We analyse data from the Edinburgh Mouse Atlas GeneExpression Database (EMAGE) which is a high quality data source for spatio-temporal gene expression patterns. Using a n...
Jano I. van Hemert, Richard A. Baldock
HICSS
2003
IEEE
166views Biometrics» more  HICSS 2003»
13 years 10 months ago
Comparative Genome Annotation for Mapping, Prediction and Discovery of Genes
We have used comparative genome analyses to produce annotated maps for large genomic loci. The first example is a locus on mouse chromosome 9 that is syntenic to human chromosome ...
Claudia Kappen, J. Michael Salbaum