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COMPGEOM
2005
ACM
13 years 8 months ago
Cache-oblivious r-trees
We develop a cache-oblivious data structure for storing a set S of N axis-aligned rectangles in the plane, such that all rectangles in S intersecting a query rectangle or point ca...
Lars Arge, Mark de Berg, Herman J. Haverkort
DAGSTUHL
2007
13 years 7 months ago
Model-Driven Development for End-Users, too!?
iary models in order to bridge the semantic gap between high-level, abstract user requirements and low-level, concrete programs and to support a stepwise refinement process. This d...
Gregor Engels
ISMB
1997
13 years 7 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
BMCBI
2006
127views more  BMCBI 2006»
13 years 6 months ago
PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
Background: Here we describe PathogenMIPer, a software program for designing molecular inversion probe (MIP) oligonucleotides for use in pathogen identification and detection. The...
Sreedevi Thiyagarajan, Miloslav Karhanek, Michael ...
NC
2008
122views Neural Networks» more  NC 2008»
13 years 6 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...