ISMB 1997 - PDF Preprint Papers

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ISMB
1997

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ANOLEA: A WWW Server to Assess Protein Structures

13 years 5 months ago

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ANOLEA (Atomic Non-Local Environment Assessment) is a www server that performs energy calculations at the atomic level in protein structures. The calculations involve the non-loca...

Francisco Melo, Damien Devos, Eric Depiereux, Erne...

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Id	Views	Title	Status

1	238	ANOLEA: A WWW Server to Assess Protein Structures	claim
2	164	Automated Alignment of RNA Sequences to Pseudoknotted Structures	claim
3	154	Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage	claim
4	154	Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations	claim
5	152	CARTHAGENE: Constructing and Joining Maximum Likelihood Genetic Maps	claim
6	130	Domain Identification by Clustering Sequence Alignments	claim
7	130	PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank)	claim
8	129	Automatic Construction of Knowledge Base from Biological Papers	claim
9	127	Better Cutters for Protein Mass Fingerprinting: Preliminary Findings	claim
10	126	Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity	claim
11	123	Novel Techniques for Visualizing Biological Information	claim
12	121	Inference of Molecular Phylogenetic Tree Based on Minimum Model-Based Complexity Method	claim
13	117	Adding Semantics to Genome Databases: Towards an Ontology for Molecular Biology	claim
14	115	A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser	claim
15	114	Bayesian Adaptive Alignment and Inference	claim
16	112	Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags	claim
17	109	Functional Prediction of B. subtilis Genes from Their Regulatory Sequences	claim
18	107	RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data	claim
19	107	Modeling Antibody Side Chain Conformations Using Heuristic Database Search	claim
20	104	Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations	claim
21	103	Predicting Enzyme Function from Sequence: A Systematic Appraisal	claim
22	101	SEALS: A System for Easy Analysis of Lots of Sequences	claim
23	99	Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data	claim
24	99	Two Methods for Improving Performance of a HMM and their Application for Gene Finding	claim
25	99	A Fast Heuristic Algorithm for a Probe Mapping Problem	claim
26	99	Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding	claim
27	98	Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions	claim
28	97	RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation	claim
29	96	Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors	claim
30	96	Multi-Body Interactions within the Graph of Protein Structure	claim
31	93	Protein Model Representation and Construction	claim
32	88	Finding Common Sequence and Structure Motifs in a Set of RNA Sequences	claim
33	83	Enumerating and Ranking Discrete Motifs	claim
34	81	Selecting Optimal Oligonucleotide Primers for Multiplex PCR	claim
35	77	The Context-Dependence of Amino Acid Properties	claim
36	70	Code Generation through Annotation of Macromolecular Structure Data	claim

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