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» Beta Binders for Biological Interactions
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CMSB
2004
Springer
13 years 10 months ago
Beta Binders for Biological Interactions
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
Corrado Priami, Paola Quaglia
ENTCS
2008
82views more  ENTCS 2008»
13 years 5 months ago
A Static Analysis for Beta-Binders
We introduce a Control Flow Analysis, that statically approximates the dynamic behaviour of processes, expressed in the Beta-Binders calculus. Our analysis of a system is able to ...
Chiara Bodei
RECOMB
2001
Springer
14 years 5 months ago
Predicting the beta-helix fold from protein sequence data
A method is presented that uses b-strand interactions to predict the parallel right-handed b-helix super-secondary structural motif in protein sequences. A program called BetaWrap...
Phil Bradley, Lenore Cowen, Matthew Menke, Jonatha...
CAINE
2007
13 years 6 months ago
Tracking Compounds and Their Interactions within In Silico Liver
We present multi-scale tracking features for the In Silico Liver (ISL) and their simulation results. The features were developed to support tracking of dynamic pharmacokinetic/pha...
Sunwoo Park, Sean H. J. Kim, Glen E. P. Ropella, C...
BMCBI
2010
88views more  BMCBI 2010»
13 years 5 months ago
Proteome scanning to predict PDZ domain interactions using support vector machines
Background: PDZ domains mediate protein-protein interactions involved in important biological processes through the recognition of short linear motifs in their target proteins. Tw...
Shirley Hui, Gary D. Bader