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» Bio-sequence database scanning on a GPU
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IPPS
2006
IEEE
13 years 10 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
BMCBI
2011
12 years 8 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
SIGMOD
2010
ACM
166views Database» more  SIGMOD 2010»
12 years 11 months ago
FAST: fast architecture sensitive tree search on modern CPUs and GPUs
In-memory tree structured index search is a fundamental database operation. Modern processors provide tremendous computing power by integrating multiple cores, each with wide vect...
Changkyu Kim, Jatin Chhugani, Nadathur Satish, Eri...
CF
2009
ACM
13 years 9 months ago
Data parallel acceleration of decision support queries using Cell/BE and GPUs
Decision Support System (DSS) workloads are known to be one of the most time-consuming database workloads that processes large data sets. Traditionally, DSS queries have been acce...
Pedro Trancoso, Despo Othonos, Artemakis Artemiou