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» Cache-Oblivious Dynamic Programming for Bioinformatics
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JBI
2006
107views Bioinformatics» more  JBI 2006»
13 years 5 months ago
KDE Bioscience: Platform for bioinformatics analysis workflows
Bioinformatics is a dynamic research area in which a large number of algorithms and programs have been developed rapidly and independently without much consideration so far of the...
Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan...
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
BIBE
2000
IEEE
110views Bioinformatics» more  BIBE 2000»
13 years 9 months ago
FURY: Fuzzy Unification and Resolution Based on Edit Distance
We present a theoretically founded framework for fuzzy unification and resolution based on edit distance over trees. Our framework extends classical unification and resolution con...
David Gilbert, Michael Schroeder
ISBRA
2009
Springer
14 years 1 days ago
Querying Protein-Protein Interaction Networks
Recent techniques increase the amount of our knowledge of interactions between proteins. To filter, interpret and organize this data, many authors have provided tools for querying...
Guillaume Blin, Florian Sikora, Stéphane Vi...
BIOINFORMATICS
2006
106views more  BIOINFORMATICS 2006»
13 years 5 months ago
Identification of biochemical networks by S-tree based genetic programming
Motivation: Most previous approaches to model biochemical networks havefocusedeither on the characterization of a networkstructurewith a number of components or on the estimation ...
Dong-Yeon Cho, Kwang-Hyun Cho, Byoung-Tak Zhang