66 search results - page 3 / 14 » Cache-Oblivious Dynamic Programming for Bioinformatics |
IISWC
2006
IEEE
13 years 11 months ago
2006
IEEE
The load instructions of some of the bioinformatics applications in the BioPerf suite possess interesting characteristics: only a few static loads cover almost the entire dynamic ...
IPPS
2003
IEEE
13 years 11 months ago
2003
IEEE
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
CSB
2005
IEEE
13 years 11 months ago
2005
IEEE
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
WABI
2005
Springer
13 years 11 months ago
2005
Springer
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
BIBM
2008
IEEE
14 years 7 days ago
2008
IEEE
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...