An essential problem for biologists is the processing and evaluation of BLAST results. We advocate the deployment of database technology and describe a userdriven tool, called Bla...
William G. Farmerie, Joachim Hammer, Li Liu, Marku...
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
— DNA sequence basecalling is commonly regarded as a solved problem, despite significant error rates being reflected in inaccuracies in databases and genome annotations. These er...
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
We describe a computational system which parses discourses consisting of sequences of simple sentences. These contain a range of temporal constructions, including time adverbials,...