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» Codon phylogenetic distance
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CANDC
2007
ACM
13 years 5 months ago
Codon phylogenetic distance
We develop here an analytical evolution model based on a trinucleotide mutation matrix 64 × 64 with nine substitution parameters associated with the three types of substitutions ...
Christian J. Michel
CORR
2007
Springer
165views Education» more  CORR 2007»
13 years 5 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
CSB
2005
IEEE
182views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance
Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
Noppadon Khiripet
BMCBI
2010
150views more  BMCBI 2010»
13 years 5 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
13 years 9 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan