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ISMB
2000
13 years 6 months ago
Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
Signal nding pattern discovery in unaligned DNA sequences is a fundamental problem in both computer science and molecular biology with important applications in locating regulator...
Pavel A. Pevzner, Sing-Hoi Sze
ALMOB
2006
138views more  ALMOB 2006»
13 years 4 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
BMCBI
2006
145views more  BMCBI 2006»
13 years 4 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
RECOMB
2001
Springer
14 years 5 months ago
Finding motifs using random projections
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
Jeremy Buhler, Martin Tompa
ICNC
2005
Springer
13 years 10 months ago
DNA Computing for Complex Scheduling Problem
Interest in DNA computing has increased overwhelmly since Adleman successfully demonstrated its capability to solve Hamiltonian Path Problem (HPP). Many research results of similar...
Mohd Saufee Muhammad, Zuwairie Ibrahim, Satomi Ued...