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» Comma-free design for DNA words
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NC
2006
116views Neural Networks» more  NC 2006»
13 years 5 months ago
Automated Design and Programming of a Microfluidic DNA Computer
Previously, we described ways to implement the functions AND and OR in a DNA computer consisting of microreactors with attached heating elements that control annealing of DNA. Base...
Michael S. Livstone, Ron Weiss, Laura F. Landweber
AI
2003
Springer
13 years 10 months ago
Hybrid Randomised Neighbourhoods Improve Stochastic Local Search for DNA Code Design
Sets of DNA strands that satisfy combinatorial constraints play an important role in various approaches to biomolecular computation, nanostructure design, and molecular tagging. Th...
Dan C. Tulpan, Holger H. Hoos
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
13 years 10 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
JCC
2011
87views more  JCC 2011»
13 years 8 days ago
NUPACK: Analysis and design of nucleic acid systems
: The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables...
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois,...
JCB
2002
70views more  JCB 2002»
13 years 5 months ago
Strong Feature Sets from Small Samples
For small samples, classi er design algorithms typically suffer from over tting. Given a set of features, a classi er must be designed and its error estimated. For small samples, ...
Seungchan Kim, Edward R. Dougherty, Junior Barrera...