4 search results - page 1 / 1 » Compressed q-Gram Indexing for Highly Repetitive Biological ... |
BIBE
2010
IEEE
12 years 11 months ago
2010
IEEE
The study of compressed storage schemes for highly repetitive sequence collections has been recently boosted by the availability of cheaper sequencing technologies and the flood of...
DASFAA
2005
IEEE
13 years 10 months ago
2005
IEEE
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
DCC
2010
IEEE
13 years 11 months ago
2010
IEEE
We introduce an alternative Lempel-Ziv text parsing, LZ-End, that converges to the entropy and in practice gets very close to LZ77. LZ-End forces sources to finish at the end of ...
RECOMB
2009
Springer
14 years 5 months ago
2009
Springer
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...