60 search results - page 2 / 12 » Compressing Genomic Sequence Fragments Using SlimGene |
RECOMB
2000
Springer
13 years 9 months ago
2000
Springer
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
BCB
2010
13 years 14 days ago
2010
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
RECOMB
2010
Springer
13 years 3 months ago
2010
Springer
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...
ISAMI
2010
13 years 3 months ago
2010
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
BIOCOMP
2007
13 years 6 months ago
2007
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...