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ATVA
2008
Springer
131views Hardware» more  ATVA 2008»
13 years 6 months ago
Computation Tree Regular Logic for Genetic Regulatory Networks
Model checking has proven to be a useful analysis technique not only for concurrent systems, but also for the genetic regulatory networks (Grns) that govern the functioning of livi...
Radu Mateescu, Pedro T. Monteiro, Estelle Dumas, H...
ATVA
2008
Springer
144views Hardware» more  ATVA 2008»
13 years 6 months ago
Tests, Proofs and Refinements
1 : Logic in Specification and Verification (abstract) Natarajan Shankar (SRI) Session Chair : Sungdeok Cha 12 : 00 13 : 00 Lunch 13 : 00 15 : 00 2 : Boolean Modeling of Cell Biolo...
Sriram K. Rajamani
BIOCOMP
2007
13 years 6 months ago
Stability Analysis of Genetic Regulatory Network with Additive Noises
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Yufang Jin
CIBB
2009
13 years 5 months ago
On the Use of Temporal Formal Logic to Model Gene Regulatory Networks
Modelling activities in molecular biology face the difficulty of prediction to link molecular knowledge with cell phenotypes. Even when the interaction graph between molecules is k...
Gilles Bernot, Jean-Paul Comet
RECOMB
2004
Springer
14 years 4 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...