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» Conserved RNA secondary structures in viral genomes: A surve...
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GCB
2003
Springer
116views Biometrics» more  GCB 2003»
13 years 10 months ago
Conserved RNA secondary structures in viral genomes: A survey
Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsi...
BIOSURVEILLANCE
2007
Springer
13 years 10 months ago
Detecting Conserved RNA Secondary Structures in Viral Genomes: The RADAR Approach
Abstract. Conserved regions, or motifs, present among RNA secondary structures serve as a useful indicator for predicting the functionality of the RNA molecules. Automated detectio...
Mugdha Khaladkar, Jason T. L. Wang
RECOMB
2006
Springer
14 years 5 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
13 years 10 months ago
Conserved RNA Pseudoknots
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
C. Thurner, Ivo L. Hofacker, Peter F. Stadler
JCB
2000
129views more  JCB 2000»
13 years 4 months ago
Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The p...
Martin Fekete, Ivo L. Hofacker, Peter F. Stadler