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JCB
2006
123views more  JCB 2006»
13 years 5 months ago
Reconstructing Ancestral Haplotypes with a Dictionary Model
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Kristin L. Ayers, Chiara Sabatti, Kenneth Lange
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
JAIR
2002
120views more  JAIR 2002»
13 years 5 months ago
Learning Geometrically-Constrained Hidden Markov Models for Robot Navigation: Bridging the Topological-Geometrical Gap
Hidden Markov models hmms and partially observable Markov decision processes pomdps provide useful tools for modeling dynamical systems. They are particularly useful for represent...
Hagit Shatkay, Leslie Pack Kaelbling
BICOB
2009
Springer
13 years 9 months ago
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Predictio
Protein-protein interaction plays critical roles in cellular functions. In this work, we propose a computational method to predict protein-protein interaction by using support vec...
Alvaro J. González, Li Liao
CIMCA
2006
IEEE
13 years 11 months ago
Constrained Circular Hidden Markov Models for Recognizing Deformed Shapes
In this paper, we analyse the properties of the standard circular hidden Markov model (HMM) on 2D shape recognition. We point out the limitations of the circular HMMs and further ...
Jinhai Cai