We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Hidden Markov models hmms and partially observable Markov decision processes pomdps provide useful tools for modeling dynamical systems. They are particularly useful for represent...
Protein-protein interaction plays critical roles in cellular functions. In this work, we propose a computational method to predict protein-protein interaction by using support vec...
In this paper, we analyse the properties of the standard circular hidden Markov model (HMM) on 2D shape recognition. We point out the limitations of the circular HMMs and further ...