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CP
2005
Springer
13 years 10 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona
ISVC
2007
Springer
13 years 11 months ago
Integrative Geometric-Hashing Approaches to Binding Site Modeling and Ligand-Protein Interaction Prediction
Abstract. The function of a protein is dependent on whether and how it can interact with various ligands. Therefore, an accurate prediction of protein-ligand interactions is paramo...
Joanna Lipinski-Kruszka, Rahul Singh
ILP
1998
Springer
13 years 9 months ago
Application of Inductive Logic Programming to Discover Rules Governing the Three-Dimensional Topology of Protein Structure
Abstract. Inductive Logic Programming (ILP) has been applied to discover rules governing the three-dimensional topology of protein structure. The data-set unifies two sources of in...
Marcel Turcotte, Stephen Muggleton, Michael J. E. ...
WABI
2007
Springer
13 years 11 months ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha
GCB
1997
Springer
74views Biometrics» more  GCB 1997»
13 years 9 months ago
Using constraint programming for lattice protein folding
We present a global search technique for nding the global minimal conformation of a sequence in Dill's HP-lattice model5;6 . The HP-lattice model is a simpli ed model of prot...
Rolf Backofen