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CLEIEJ
2006
88views more  CLEIEJ 2006»
13 years 5 months ago
A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
Concurrent process calculi are powerful formalisms for modelling concurrent systems. The mathematical style underlying process calculi allow to both model and verify properties of...
Carlos Olarte, Camilo Rueda
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
13 years 11 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
ASPLOS
2009
ACM
14 years 6 months ago
GPU acceleration of a production molecular docking code
Abstract: Modeling the interactions of biological molecules, or docking, is critical to both understanding basic life processes and to designing new drugs. Here we describe the GPU...
Bharat Sukhwani, Martin C. Herbordt
JCB
2002
131views more  JCB 2002»
13 years 5 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong