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ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
13 years 5 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...
JCB
2008
71views more  JCB 2008»
13 years 5 months ago
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm
Quartet-based phylogeny reconstruction methods, such as Quartet Puzzling, were introduced in the hope that they might be competitive with maximum likelihood methods, without being...
Sagi Snir, Tandy Warnow, Satish Rao
ICPADS
2006
IEEE
13 years 11 months ago
Acceleration of Maximum Likelihood Estimation for Tomosynthesis Mammography
Maximum likelihood (ML) estimation is used during tomosynthesis mammography reconstruction. A single reconstruction involves the processing of highresolution projection images, wh...
Juemin Zhang, Waleed Meleis, David R. Kaeli, Tao W...
RECOMB
2005
Springer
14 years 5 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...