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BMCBI
2004
151views more  BMCBI 2004»
13 years 4 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
HPCA
2009
IEEE
14 years 5 months ago
Design and implementation of software-managed caches for multicores with local memory
Heterogeneous multicores, such as Cell BE processors and GPGPUs, typically do not have caches for their accelerator cores because coherence traffic, cache misses, and latencies fr...
Sangmin Seo, Jaejin Lee, Zehra Sura
HIPC
2005
Springer
13 years 10 months ago
Performance Study of LU Decomposition on the Programmable GPU
With the increasing programmability of GPUs (graphics processing units), these units are emerging as an attractive computing platform not only for traditional graphics computation ...
Fumihiko Ino, Manabu Matsui, Keigo Goda, Kenichi H...
BMCBI
2007
233views more  BMCBI 2007»
13 years 5 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
CN
1999
107views more  CN 1999»
13 years 4 months ago
Programmable mobile networks
We present the design, implementation and evaluation of an open programmable mobile network based on distributed object technology called mobiware that dynamically exploits the in...
Andrew T. Campbell, Michael E. Kounavis, Raymond R...