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RECOMB
2003
Springer
14 years 5 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm
ICSE
2009
IEEE-ACM
14 years 1 days ago
Mining exception-handling rules as sequence association rules
Programming languages such as Java and C++ provide exception-handling constructs to handle exception conditions. Applications are expected to handle these exception conditions and...
Suresh Thummalapenta, Tao Xie
BMCBI
2008
126views more  BMCBI 2008»
13 years 5 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BMCBI
2010
107views more  BMCBI 2010»
13 years 5 months ago
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
Background: Sequencing metagenomes that were pre-amplified with primer-based methods requires the removal of the additional tag sequences from the datasets. The sequenced reads ca...
Robert Schmieder, Yan Wei Lim, Forest Rohwer, Robe...
ICDE
2003
IEEE
247views Database» more  ICDE 2003»
14 years 6 months ago
CLUSEQ: Efficient and Effective Sequence Clustering
Analyzing sequence data has become increasingly important recently in the area of biological sequences, text documents, web access logs, etc. In this paper, we investigate the pro...
Jiong Yang, Wei Wang 0010