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» Discovering Patterns and Subfamilies in Biosequences
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1996
13 years 6 months ago
Discovering Patterns and Subfamilies in Biosequences
Weconsider the problemof automaticdiscoveryof patterns and the corresponding subfamilies in a set of biosequences. Thesequences are unaligned and may contain noise of unknownlevel...
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vi...
TCBB
2010
98views more  TCBB 2010»
13 years 7 days ago
VARUN: Discovering Extensible Motifs under Saturation Constraints
Abstract-The discovery of motifs in biosequences is frequently torn between the rigidity of the model on the one hand and the abundance of candidates on the other. In particular, m...
Alberto Apostolico, Matteo Comin, Laxmi Parida
KES
2005
Springer
13 years 11 months ago
Generalized Composite Motif Discovery
This paper discusses a general algorithm for the discovery of motif combinations. From a large number of input motifs, discovered by any single motif discovery tool, our algorithm ...
Geir Kjetil Sandve, Finn Drabløs
KDD
2003
ACM
146views Data Mining» more  KDD 2003»
14 years 6 months ago
Probabilistic discovery of time series motifs
Several important time series data mining problems reduce to the core task of finding approximately repeated subsequences in a longer time series. In an earlier work, we formalize...
Bill Yuan-chi Chiu, Eamonn J. Keogh, Stefano Lonar...