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ICPADS
2005
IEEE
13 years 10 months ago
Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors
New biological experimental techniques are continuing to generate large amounts of data using DNA, RNA, human genome and protein sequences. The quantity and quality of data from t...
Xiandong Meng, Vipin Chaudhary
IPPS
2007
IEEE
13 years 11 months ago
A Multi-Level Parallel Implementation of a Program for Finding Frequent Patterns in a Large Sparse Graph
Graphs capture the essential elements of many problems broadly defined as searching or categorizing. With the rapid increase of data volumes from sensors, many application discipl...
Steve Reinhardt, George Karypis
HPDC
2010
IEEE
13 years 5 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
CIKM
2009
Springer
13 years 9 months ago
Density-based clustering using graphics processors
During the last few years, GPUs have evolved from simple devices for the display signal preparation into powerful coprocessors that do not only support typical computer graphics t...
Christian Böhm, Robert Noll, Claudia Plant, B...
ISVLSI
2005
IEEE
169views VLSI» more  ISVLSI 2005»
13 years 10 months ago
High Performance Array Processor for Video Decoding
high NRE cost. Therefore, general purpose programmable processors using software to perform various functions become more attractive since programmability can simplify system devel...
J. Lee, Narayanan Vijaykrishnan, Mary Jane Irwin