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» Factored A* Search for Models over Sequences and Trees
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RECOMB
2005
Springer
14 years 6 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
IPPS
2006
IEEE
13 years 12 months ago
Phylogenetic models of rate heterogeneity: a high performance computing perspective
Inference of phylogenetic trees using the maximum likelihood (ML) method is NP-hard. Furthermore, the computation of the likelihood function for huge trees of more than 1,000 orga...
Alexandros Stamatakis
ICIP
2010
IEEE
13 years 3 months ago
Comparison of merging orders and pruning strategies for Binary Partition Tree in hyperspectral data
Hyperspectral imaging segmentation has been an active research area over the past few years. Despite the growing interest, some factors such as high spectrum variability are still...
Silvia Valero, Philippe Salembier, Jocelyn Chanuss...
BMCBI
2005
149views more  BMCBI 2005»
13 years 5 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
FLAIRS
2004
13 years 7 months ago
An Application of Neural Networks to Sequence Analysis and Genre Identification
This study borrowed sequence analysis techniques from the genetic sciences and applied them to a similar problem in email filtering and web searching. Genre identification is the ...
David Bisant