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» Fast Molecular Shape Matching Using Contact Maps
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JCB
2007
168views more  JCB 2007»
13 years 5 months ago
Fast Molecular Shape Matching Using Contact Maps
In this paper, we study the problem of computing the similarity of two protein structures ring their contact-map overlap. Contact-map overlap abstracts the problem of computing th...
Pankaj K. Agarwal, Nabil H. Mustafa, Yusu Wang
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
RECOMB
1999
Springer
13 years 9 months ago
Fast detection of common geometric substructure in proteins
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
L. Paul Chew, Daniel P. Huttenlocher, Klara Kedem,...
ECCV
2010
Springer
13 years 5 months ago
Geodesic Shape Retrieval via Optimal Mass Transport
This paper presents a new method for 2-D and 3-D shape retrieval based on geodesic signatures. These signatures are high dimensional statistical distributions computed by extractin...
Julien Rabin, Gabriel Peyré, Laurent D. Coh...
ISMB
1994
13 years 6 months ago
High Speed Pattern Matching in Genetic Data Base with Reconfigurable Hardware
Homologydetection in large data bases is probably the most time consuming operation in molecular genetic computing systems. Moreover, the progresses made all around the world conc...
Eric Lemoine, Joël Quinqueton, Jean Sallantin