97 search results - page 3 / 20 » Faster Algorithms for Sampling and Counting Biological Seque... |
GCB
2000
Springer
13 years 9 months ago
2000
Springer
In previous work [10], we considered algorithms related to the statistics of matches with words and regular expressions in texts generated by Bernoulli or Markov sources. In this w...
BMCBI
2004
13 years 5 months ago
2004
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
IPPS
2010
IEEE
13 years 3 months ago
2010
IEEE
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
BMCBI
2010
13 years 4 months ago
2010
Background: Recent technological advancements have made high throughput sequencing an increasingly popular approach for transcriptome analysis. Advantages of sequencing-based tran...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...