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WABI
2007
Springer
107views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps
Marco Vassura, Luciano Margara, Pietro di Lena, Fi...
ISBRA
2007
Springer
13 years 11 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
BMCBI
2006
152views more  BMCBI 2006»
13 years 5 months ago
A two-stage approach for improved prediction of residue contact maps
Background: Protein topology representations such as residue contact maps are an important intermediate step towards ab initio prediction of protein structure. Although improvemen...
Alessandro Vullo, Ian Walsh, Gianluca Pollastri
SIAMSC
2008
182views more  SIAMSC 2008»
13 years 4 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye