Sciweavers

32 search results - page 1 / 7
» Fragment assembly with short reads
Sort
View
BIOINFORMATICS
2004
71views more  BIOINFORMATICS 2004»
13 years 4 months ago
Fragment assembly with short reads
Mark Chaisson, Pavel A. Pevzner, Haixu Tang
ICCABS
2011
12 years 8 months ago
CloG: A pipeline for closing gaps in a draft assembly using short reads
— Closing of gaps in draft assemblies using Next Generation Sequencing (NGS) data is becoming increasingly important. In this paper we present CloG, a software pipeline that uses...
Xing Yang, Daniel Medvin, Giri Narasimhan, Deborah...
SCFBM
2008
91views more  SCFBM 2008»
13 years 4 months ago
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Background: The advent of pyrophosphate sequencing makes large volumes of sequencing data available at a lower cost than previously possible. However, the short read lengths are d...
Nicolas J. Parker, Andrew G. Parker
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
13 years 2 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala
RECOMB
2008
Springer
14 years 5 months ago
Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads
Next Generation Sequencing (NGS) technologies are capable of reading millions of short DNA sequences both quickly and cheaply. While these technologies are already being used for r...
Paul Medvedev, Michael Brudno