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COCOON
2006
Springer
13 years 8 months ago
Reconciling Gene Trees with Apparent Polytomies
We consider the problem of reconciling gene trees with a species tree based on the widely accepted Gene Duplication model from Goodman et al. Current algorithms that solve this pro...
Wen-Chieh Chang 0002, Oliver Eulenstein
JCB
2007
104views more  JCB 2007»
13 years 4 months ago
Counting Coalescent Histories
Given a species tree and a gene tree, a valid coalescent history is a list of the branches of the species tree on which coalescences in the gene tree take place. I develop a recur...
Noah A. Rosenberg
RECOMB
2010
Springer
13 years 3 months ago
Detecting Highways of Horizontal Gene Transfer
Abstract. In a horizontal gene transfer (HGT) event a gene is transferred between two species that do not share an ancestor-descendant relationship. Typically, no more than a few g...
Mukul S. Bansal, J. Peter Gogarten, Ron Shamir
RECOMB
2011
Springer
12 years 7 months ago
Algorithms for MDC-Based Multi-locus Phylogeny Inference
One of the criteria for inferring a species tree from a collection of gene trees, when gene tree incongruence is assumed to be due to incomplete lineage sorting (ILS), is minimize ...
Yun Yu, Tandy Warnow, Luay Nakhleh