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BMCBI
2002
137views more  BMCBI 2002»
13 years 5 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2006
172views more  BMCBI 2006»
13 years 5 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
APBC
2003
138views Bioinformatics» more  APBC 2003»
13 years 7 months ago
A New Approach to Protein Structure and Function Analysis Using Semi-structured Databases
The development of high-throughput genome sequencing and protein structure determination techniques have provided researchers with a wealth of biological data. Integrated analysis...
William M. Shui, Raymond K. Wong, Stephen C. Graha...
DAWAK
2007
Springer
13 years 12 months ago
What-If Analysis for Data Warehouse Evolution
In this paper, we deal with the problem of performing what-if analysis for changes that occur in the schema/structure of the data warehouse We abstract software modules, queries, r...
George Papastefanatos, Panos Vassiliadis, Alkis Si...
RECOMB
2009
Springer
14 years 6 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...