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BMCBI
2007
202views more  BMCBI 2007»
13 years 5 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
BMCBI
2010
103views more  BMCBI 2010»
13 years 5 months ago
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
Background: Guanosine triphosphate (GTP)-binding proteins play an important role in regulation of G-protein. Thus prediction of GTP interacting residues in a protein is one of the...
Jagat S. Chauhan, Nitish K. Mishra, Gajendra P. S....
BMCBI
2008
138views more  BMCBI 2008»
13 years 5 months ago
Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction
Background: We present a novel method of protein fold decoy discrimination using machine learning, more specifically using neural networks. Here, decoy discrimination is represent...
Ching-Wai Tan, David T. Jones
ISBRA
2009
Springer
14 years 15 days ago
Querying Protein-Protein Interaction Networks
Recent techniques increase the amount of our knowledge of interactions between proteins. To filter, interpret and organize this data, many authors have provided tools for querying...
Guillaume Blin, Florian Sikora, Stéphane Vi...
BMCBI
2007
107views more  BMCBI 2007»
13 years 5 months ago
Reuse of structural domain-domain interactions in protein networks
Background: Protein interactions are thought to be largely mediated by interactions between structural domains. Databases such as iPfam relate interactions in protein structures t...
Benjamin Schuster-Böckler, Alex Bateman