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BMCBI
2010
155views more  BMCBI 2010»
13 years 5 months ago
BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
Background: Bisulfite sequencing is a popular method to analyze DNA methylation patterns at high resolution. A region of interest is targeted by PCR and about 20-50 subcloned DNA ...
Christian Rohde, Yingying Zhang, Richard Reinhardt...
TAMC
2009
Springer
14 years 9 days ago
Approximability and Fixed-Parameter Tractability for the Exemplar Genomic Distance Problems
In this paper, we present a survey of the approximability and fixed-parameter tractability results for some Exemplar Genomic Distance problems. We mainly focus on three problems: ...
Binhai Zhu
WOB
2004
102views Bioinformatics» more  WOB 2004»
13 years 7 months ago
An Agent-Based System for Re-annotation of Genomes
Genome annotation projects may produce wrong results since they may be based on obsolete data or wrong models. This work aims to develop an automatic re-annotation system that use ...
Leonardo Vianna do Nascimento, Ana L. C. Bazzan
RECOMB
2010
Springer
13 years 4 months ago
Scaffold Filling under the Breakpoint Distance
Motivated by the trend of genome sequencing without completing the sequence of the whole genomes, Mu˜noz et al. recently studied the problem of filling an incomplete multichromos...
Haitao Jiang, Chunfang Zheng, David Sankoff, Binha...