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» Hybrid Genetic Algorithm for DNA Sequencing with Errors
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CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
13 years 6 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
ACRI
2008
Springer
13 years 11 months ago
Automatic Design of FPGA Processor for the Backtracking of DNA Sequences Evolution Using Cellular Automata and Genetic Algorithm
In several cases, the DNA sequences of an organism are available in different stages of its evolution and it is desirable to reconstruct the DNA sequence in a previous evolution st...
Georgios Ch. Sirakoulis
CEC
2008
IEEE
13 years 11 months ago
A self-adaptive cellular memetic algorithm for the DNA fragment assembly problem
Abstract— The DNA fragment assembly problem is to reconstruct a DNA chain from multiple fragments that have previously been sequenced in a laboratory. This is a critical step in ...
Bernabé Dorronsoro, Enrique Alba, Gabriel L...
GECCO
2007
Springer
209views Optimization» more  GECCO 2007»
13 years 8 months ago
Hardware acceleration of multi-deme genetic algorithm for the application of DNA codeword searching
A large and reliable DNA codeword library is key to the success of DNA based computing. Searching for sets of reliable DNA codewords is an NP-hard problem, which can take days on ...
Qinru Qiu, Daniel J. Burns, Prakash Mukre, Qing Wu
CCS
2007
ACM
13 years 11 months ago
Privacy preserving error resilient dna searching through oblivious automata
Human Desoxyribo-Nucleic Acid (DNA) sequences offer a wealth of information that reveal, among others, predisposition to various diseases and paternity relations. The breadth and...
Juan Ramón Troncoso-Pastoriza, Stefan Katze...