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» Hybrid Genetic Algorithm for DNA Sequencing with Errors
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BMCBI
2010
90views more  BMCBI 2010»
13 years 5 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman
BIOSYSTEMS
2008
129views more  BIOSYSTEMS 2008»
13 years 5 months ago
Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction?
Change of DNA sequence that fuels evolution is, to a certain extent, a deterministic process because mutagenesis does not occur in an absolutely random manner. So far, it has not ...
Ch. Mizas, Georgios Ch. Sirakoulis, Vasilios A. Ma...
CIBCB
2007
IEEE
13 years 9 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
RECOMB
2000
Springer
13 years 8 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li