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» IDBA - A Practical Iterative de Bruijn Graph De Novo Assembl...
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RECOMB
2010
Springer
13 years 11 months ago
IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler
Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis ...
BMCBI
2010
189views more  BMCBI 2010»
13 years 5 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
BMCBI
2010
183views more  BMCBI 2010»
13 years 5 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...