Abstract. Iterative compilation is an efficient approach to optimize programs on rapidly evolving hardware, but it is still only scarcely used in practice due to a necessity to gat...
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
Background: Domains are the basic functional units of proteins. It is believed that protein-protein interactions are realized through domain interactions. Revealing multi-domain c...
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
We have been developing a Grid-enabled MPI communication library called GridMPI, which is designed to run on multiple clusters connected to a wide-area network. Some of these clust...