In this paper we consider the p-ary transitive reduction (TRp) problem where p > 0 is an integer; for p = 2 this problem arises in inferring a sparsest possible (biological) sig...
In this paper we introduce a new method of combined synthesis and inference of biological signal transduction networks. A main idea of our method lies in representing observed cau...
We develop a new framework for inferring models of transcriptional regulation. The models in this approach, which we call physical models, are constructed on the basis of verifiab...