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» Inferring biological networks with output kernel trees
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BMCBI
2006
127views more  BMCBI 2006»
13 years 5 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
ICML
2010
IEEE
13 years 6 months ago
On learning with kernels for unordered pairs
We propose and analyze two strategies to learn over unordered pairs with kernels, and provide a common theoretical framework to compare them. The strategies are related to methods...
Martial Hue, Jean-Philippe Vert
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
RECOMB
2005
Springer
14 years 5 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
WABI
2009
Springer
162views Bioinformatics» more  WABI 2009»
13 years 12 months ago
Aligning Biomolecular Networks Using Modular Graph Kernels
Comparative analysis of biomolecular networks constructed using measurements from different conditions, tissues, and organisms offer a powerful approach to understanding the stru...
Fadi Towfic, M. Heather West Greenlee, Vasant Hona...