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BMCBI
2011
12 years 9 months ago
HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods
Background: Although homology-based methods are among the most widely used methods for predicting the structure and function of proteins, the question as to whether interface sequ...
Li C. Xue, Drena Dobbs, Vasant Honavar
BIBE
2004
IEEE
115views Bioinformatics» more  BIBE 2004»
13 years 9 months ago
Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets
Current motif discovery methods can only detect individual motifs in groups of protein sequences--they do not discover potentially-interacting motif pairs underlying the interacti...
Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng
IJBRA
2008
97views more  IJBRA 2008»
13 years 5 months ago
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
: A major challenge in text mining for biomedicine is automatically extracting protein-protein interactions from the vast amount of biomedical literature. We have constructed an in...
Deyu Zhou, Yulan He, Chee Keong Kwoh
TCBB
2010
136views more  TCBB 2010»
13 years 3 months ago
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles
—Proteins and their interactions govern virtually all cellular processes, such as regulation, signaling, metabolism, and structure. Most experimental findings pertaining to such ...
Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, ...
JCB
2008
82views more  JCB 2008»
13 years 4 months ago
Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions
Controlled intra-nuclear organisation of proteins is critical for sustaining correct function of the cell. Proteins and RNA are transported by passive diffusion and associate with...
Mikael Bodén, Rohan D. Teasdale