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» Integrated search and alignment of protein structures
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BIOINFORMATICS
2008
99views more  BIOINFORMATICS 2008»
13 years 4 months ago
Integrated search and alignment of protein structures
Ahmet Sacan, Ismail Hakki Toroslu, Hakan Ferhatosm...
BMCBI
2010
113views more  BMCBI 2010»
13 years 4 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
13 years 4 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
ISMB
2003
13 years 6 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
13 years 10 months ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...