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» Lattice model refinement of protein structures
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CORR
2010
Springer
124views Education» more  CORR 2010»
13 years 2 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
13 years 2 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...
EMNLP
2006
13 years 6 months ago
Protein folding and chart parsing
How can proteins fold so quickly into their unique native structures? We show here that there is a natural analogy between parsing and the protein folding problem, and demonstrate...
Julia Hockenmaier, Aravind K. Joshi, Ken A. Dill
IJDMB
2010
128views more  IJDMB 2010»
13 years 2 months ago
Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal latt
: Crystal lattices are discrete models of the three-dimensional space that have been effectively employed to facilitate the task of determining proteins' natural conformation....
Alessandro Dal Palù, Agostino Dovier, Enric...
BIOCOMP
2008
13 years 6 months ago
Inverse protein folding in 3D hexagonal prism lattice under HP model
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...