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BIOCOMP
2007
10 years 4 months ago
Learning Node Replacement Graph Grammars in Metabolic Pathways
— This paper describes graph-based relational, unsupervised learning algorithm to infer node replacement graph grammar and its application to metabolic pathways. We search for fr...
Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder...
IDA
2007
Springer
10 years 2 months ago
Inference of node replacement graph grammars
Graph grammars combine the relational aspect of graphs with the iterative and recursive aspects of string grammars, and thus represent an important next step in our ability to dis...
Jacek P. Kukluk, Lawrence B. Holder, Diane J. Cook
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
10 years 8 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
ECCB
2005
IEEE
10 years 8 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
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