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WABI
2009
Springer
130views Bioinformatics» more  WABI 2009»
13 years 12 months ago
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
It becomes more and more important to search for similar structures from molecular 3-D structure databases in the structural biology of the post genomic era. Two molecules are said...
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
RECOMB
2009
Springer
14 years 5 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
BMCBI
2005
100views more  BMCBI 2005»
13 years 5 months ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas
IJON
2010
199views more  IJON 2010»
13 years 2 months ago
DFS-generated pathways in GA crossover for protein structure prediction
Genetic Algorithms (GAs), as nondeterministic conformational search techniques, are promising for solving protein structure prediction (PSP) problems. The crossover operator of a ...
Tamjidul Hoque, Madhu Chetty, Andrew Lewis, Abdul ...
ADL
2000
Springer
251views Digital Library» more  ADL 2000»
13 years 9 months ago
Efficient Similarity Search in Digital Libraries
Digital libraries are a core information technology. When the stored data is complex, e.g. high-resolution images or molecular protein structures, simple query types like the exac...
Christian Böhm, Bernhard Braunmüller, Ha...