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» Local Similarity in RNA Secondary Structures
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JCB
2007
136views more  JCB 2007»
13 years 5 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
BMCBI
2007
143views more  BMCBI 2007»
13 years 5 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
13 years 12 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
BIOINFORMATICS
2004
45views more  BIOINFORMATICS 2004»
13 years 5 months ago
Prediction of locally stable RNA secondary structures for genome-wide surveys
Ivo L. Hofacker, Barbara Priwitzer, Peter F. Stadl...
RECOMB
2006
Springer
14 years 6 months ago
RNA Secondary Structure Prediction Via Energy Density Minimization
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
Can Alkan, Emre Karakoç, Süleyman Cenk...