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CPM
2004
Springer
86views Combinatorics» more  CPM 2004»
13 years 10 months ago
Optimizing Multiple Spaced Seeds for Homology Search
Optimized spaced seeds improve sensitivity and specificity in local homology search. Several authors have shown that multiple seeds can have better sensitivity and specificity t...
Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
BMCBI
2005
92views more  BMCBI 2005»
13 years 5 months ago
A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
Andreas Möglich, Daniel Weinfurtner, Till Mau...
IPSN
2005
Springer
13 years 10 months ago
Coverage and hole-detection in sensor networks via homology
We consider coverage problems in sensor networks of stationary nodes with minimal geometric data. In particular, there are no coordinates and no localization of nodes. We introduc...
Robert Ghrist, Abubakr Muhammad
IJRR
2006
145views more  IJRR 2006»
13 years 5 months ago
Coordinate-free Coverage in Sensor Networks with Controlled Boundaries via Homology
ABSTRACT. We introduce tools from computational homology to verify coverage in an idealized sensor network. Our methods are unique in that, while they are coordinate-free and assum...
V. de Silva, R. Ghrist
ISMB
1998
13 years 6 months ago
Identification of Divergent Functions in Homologous Proteins by Induction over Conserved Modules
Homologousproteins do not necessarily exhibit identical biochemicalfunction. Despitethis fact, local or global sequence similarity is widely used as an indication of functional id...
Imran Shah, Lawrence Hunter