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BIOTECHNO
2008
IEEE
13 years 11 months ago
Mathematical Description of Biological Structures and Mechanisms
A new formalism and approach to describing cellular and molecular processes and structures is introduced, designed to support the creation of knowledge bases of molecular and cell...
H. Joel Jeffrey
TCSB
2010
13 years 2 months ago
Biomodel Engineering - From Structure to Behavior
Biomodel engineering is the science of designing, constructing and analyzing computational models of biological systems. It forms a systematic and powerful extension of earlier mat...
Rainer Breitling, Robin Donaldson, David R. Gilber...
ASM
2005
ASM
13 years 10 months ago
CoreASM: An Extensible ASM Execution Engine
In this paper we introduce a new research effort in making state machines executable. The aim is to specify and implement an execution engine for a language that is as close as po...
Roozbeh Farahbod, Vincenzo Gervasi, Uwe Gläss...
FUIN
2010
136views more  FUIN 2010»
13 years 1 months ago
Modeling Biology using Generic Reactive Animation
Abstract. Complex biological systems involve incorporated behaviors of numerous processes, mechanisms and objects. However, experimental analysis, by its nature, divides biological...
Yaki Setty, Irun R. Cohen, David Harel
BIOINFORMATICS
2006
118views more  BIOINFORMATICS 2006»
13 years 4 months ago
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription
Motivation Quantitative estimation of the regulatory relationship between transcription factors and genes is a fundamental stepping stone when trying to develop models of cellular...
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrenc...